6000 Disease Management in the Home Vegetable Garden | UGA Cooperative Extension


Home Vegetable

Revised by Elizabeth Little, Home Garden/Small Farm Plant Pathologist
Original manuscript by David Langston, Vegetable Plant Pathologist
Taft Eaker, Former Homeowner IPM Specialist

Plant diseases may be a problem in the home garden, especially during warm, wet weather. Most vegetables are susceptible to at least a few diseases, but some diseases are more of a problem than others. Root rot, leaf spots and fruit rots are the more common vegetable disease problems. Fortunately, Georgia has a long cool season from fall through spring when a wide variety of cool-season crops can be grown with significantly lower disease risk.

Four types of organisms primarily cause plant diseases: fungi, bacteria, nematodes and viruses. These organisms are often referred to as plant parasites or pathogens.

Plant diseases caused by fungi and bacteria are most common when rain showers and/or heavy dews are frequent and temperatures are warm. During these times, scout the garden regularly for disease. Viral diseases of vegetables occur mainly during the summer when the insects that carry these diseases are most active. Nematodes thrive when temperatures are warm but they can feed on plant roots all year. Although nematode damage to the root system is hidden, high numbers of the pests will reduce plant growth and yields.

Home gardeners can greatly reduce the occurrence of many diseases by following sound cultural practices as described in this publication.

Site Selection

Although few people have an ideal garden spot, site selection is important for a successful garden. A home garden site should be well drained. Avoid wet and poorly drained soils. Excessive soil moisture will contribute greatly to disease, especially seedling, root and crown diseases. A sunny, open, well-ventilated site is important for growing healthy vegetables. Most vegetables need plenty of sun to thrive. Shade and dense vegetation around the site can encourage more plant disease by creating a more humid environment in which most plant pathogens thrive. Full sun speeds drying of the foliage, which can reduce the incidence of most foliar diseases.

Crop Rotation

Crop rotation is very important in reducing losses to vegetable diseases. Continuous plantings of the same plant family of vegetables in the same spot provide opportunities for pathogen buildup. Only grow the same type of vegetable or closely-related vegetables in the same soil once every three to five years. This practice starves out most pathogens that cause stem and leaf diseases.

Longer crop rotations and/or other management methods may be needed for soil-borne problems such as root and crown diseases caused by the fungi Phytophthora, Rhizoctonia, Pythium and Sclerotium, vascular wilts caused by Ralstonia or Fusarium, and root-knot nematodes. These organisms are long-lived and affect many plant families.

Table 1 lists common vegetables by families or groups. Rotate vegetables with others outside of that group to minimize soil-borne diseases.


Table 1. Commonly grown vegetables and their plant families.
Alliaceae Brassicaceae Cucurbitacae Fabaceae Solanaceae
Brussels sprouts
Honeydew melons
All beans
English peas
Southern peas
Asteraceae Poaceae Malvaceae Chenopodiaceae Apiaceae
Lettuce Corn Okra Spinach Carrot

Disease-Free Seed and Transplants

Many plant diseases can be seed-borne. If seeds are to be saved, consult seed saving guides for information on which plant species or cultivars are appropriate. Only save the seeds of healthy plants.

Certain diseases, especially fungal and bacterial leaf and fruit spots, can contaminate the seed of their host plant with the disease-causing fungal spores or bacterial cells. When contaminated seed is planted the following year, the new plant is vulnerable to infection from this additional source of disease. Commercially available seed is often, but not always, produced in the arid western United States where seed-borne pathogens are less common. Seed should only be saved from healthy plants or purchased from reputable seed companies.

Seed companies often apply fungicides to protect seeds. Although these treatments give some protection against pathogens in the soil that attack germinating seed and emerging seedlings, they do not control pathogens that may attack the plant after the seedling stage.

Gardeners starting a crop from transplants should examine transplants carefully before purchasing. Select healthy transplants that appear disease- and insect-free.

Disease-Resistant Varieties

Planting resistant varieties is the most efficient way of managing troublesome vegetable diseases. Make an effort to buy resistant varieties when they are available. Seed catalogs generally list the resistant traits of vegetable varieties.

In the Southeast, the important disease resistances (with their seed catalog abbreviations) to consider include:

  • Tomatoes: Fusarium wilt (F2, F3) and root-knot nematode (N) resistance. Some varieties may also have partial resistance to early blight (AB) and late blight (LB).
  • Squash/Cucumbers: Powdery mildew (PM), downy mildew (DM), anthracnose (A), scab (S) and virus (WMV, ZMV, CMV, etc.).
  • Beans: Bean mosaic virus (BMV), anthracnose (A).

Resistance is a relative term and resistant varieties can be either totally immune or only partially resistant depending on the disease and the variety. Less disease can be expected on partially resistant varieties, which may be enough to manage the disease in most years. Most resistant varieties are F1 hybrids. Open pollinated or heirloom varieties generally will not be labeled as disease- resistant. Purchasing non-resistant varieties is also an option, although more care may be needed to prevent certain diseases.

Planting Date Management

Planting dates can be an effective tool for disease management. Planting seeds when the soil is the wrong temperature for good germination can increase seed and seedling disease. Follow the recommended planting dates for the particular vegetable being grown. Warmseason crops are most susceptible to damage from cold temperatures and cool-season seed may not germinate if temperatures are hot.

Planting date adjustment can also be used to avoid times of year when pest pressure is high. Generally, the most devastating pests occur during the warmer months. The desire to produce an early crop must be balanced against temperatures that are too cool for plant growth. Examples of crops that benefit from early planting (and the pests that are avoided) include: corn (corn ear worm, rust), beans (rusts, viruses, heat damage) and squash (stem borer, pickle worm, downy and powdery mildew, viruses). Late summer/early fall plantings of these crops may also be beneficial for avoiding pests. Planting transplants can help with getting a crop established early as long as the transplants are disease-free.

Proper Spacing and Trellisi 0002 ng 5FF4

Proper spacing and trellising can reduce the occurrence of many vegetable foliar diseases, especially fungal and bacterial diseases that thrive in extended wet periods. Space plants properly to allow good air circulation. Wet conditions are prolonged if plants are crowded and unable to dry quickly.

Tomatoes, beans and cucumbers, in particular, will benefit from some type of staking or trellising since they are all subject to troublesome foliar fungal and bacterial diseases. The improved air circulation will dry the foliage more quickly and reduce disease severity.

Proper Watering

Proper water management is important for keeping plants healthy. Constantly wet soils contribute to soilborne diseases such as seed decay, damping-off, and root and crown rot. Water on foliage contributes to foliar diseases. To encourage a healthy root system, water deeply (1-inch equivalent) and only when needed (no more than once per week, if possible) based on natural rainfall. More water will be needed during hot, dry weather, while very little additional water may be needed during cooler months.

Drip irrigation slowly releases water for a thorough soaking and is the most efficient means of irrigation. Hand watering is effective for small plantings as long as the water is directed at the base of the plant and not the foliage. Sprinkler irrigation is the least desirable watering method in terms of efficiency and disease prevention. If sprinkler irrigation is used, water on sunny mornings when foliage will dry most quickly.

Maintain uniform soil moisture. A mulch layer will help conserve soil moisture and can reduce problems such as blossom end rot (calcium deficiency) of tomatoes and peppers.

Don't work in the garden when plants and soil are wet. Bacterial and fungal diseases spread easily from one plant to another on hands and clothing when above-ground plant parts are wet.


Many plant pathogens survive in the soil and can spend the winter in soil debris. Mulch such as straw, bark, leaves, shredded paper or plastic will help prevent both soil from splashing onto plants and fruit from touching the bare ground. Tomatoes in particular benefit from a mulch layer to help prevent diseases such as early blight.

Ripening fruit such as strawberries, tomatoes, squash, cucumbers and melons will easily pick up fruit rots from bare soil. Mulches also help conserve soil moisture, reduce weed infestations and improve overall plant health. Some mulch materials, such as straw, leaves, shredded wood or bark, will also add beneficial organic matter as they decompose.

Proper Fertilization and Organic Matter

Adequate fertilization helps prevent vegetable diseases. Test soil three to six months before the growing season, and follow the recommendations to supply appropriate nutrients and to adjust soil pH. Most vegetables prefer soil pH in the range of 6.5 to 7.0.

Soil organic matter from decomposed plant materials is an important factor in plant health. Not only are plants better able to absorb and utilize nutrition, but the microbial diversity in organically rich soils also helps keep diseases from becoming established. An optimal range for soil organic matter content is two to five percent. Good quality compost is considered an ideal source of organic matter. Fresh manures can burn plants and introduce pathogens; therefore, manures should be well composted before they are added to the garden. Cover crops can also supply a portion of the organic matter.

Weed Control

Weeds can be another source of diseases and insects. For example, some weeds can serve as reservoirs for several insect-transmitted viruses that can infect homegrown vegetables. Weeds can also compete with vegetables for nutrients and sun. Good weed control will increase air movement in the garden and decrease conditions -- such as excessive moisture -- that favor disease development.

Nematode Control

Plant-parasitic nematode management is important for growing vegetable crops. Most vegetables are susceptible to nematode damage. Nematodes are microscopic soilinhabiting roundworms. Many species are beneficial but some injure vegetables and other plants by feeding on and damaging their root systems. Nematode damage may go undetected, but high numbers of the pests can sap the energy from your plants. If you suspect a problem, your soil can be checked for nematodes by submitting a soil sample to your county Extension office. The most damaging nematode in Georgia is the root-knot nematode, named for the knots it produces on infested roots.

The goal is to keep plant-parasitic nematode numbers at a low level. Although there are no nematode pesticides available for home gardeners, and no single method eliminates nematodes entirely, cultural management methods can prove effective. Nematode management strategies may include:

  • Rotating crops to non-hosts of the problem nematode
  • Planting varieties with nematode resistance
  • Planting nematode-suppressive cover crops
  • Increasing soil organic matter and microbial diversity
  • Solarization
  • Using biocontrol products

Optimizing plant and soil health is the first line of defense against nematodes. Active microbial populations have been shown to have a direct suppressive effect on plant-parasitic nematodes; however, this strategy must be combined with rotation to non-host crops to break the nematode life cycle. Some plant varieties have nematode resistance, especially many hybrid tomatoes.


Sanitation, or removal of potentially diseased plant material, will help reduce the survival of disease-causing organisms and future disease outbreaks. After harvest, remove the plants and plant residue. Uproot entire plants when possible. Promptly remove and destroy diseased plants. Leaf spot outbreaks may be reduced if early-infected leaves are removed and destroyed.


Pesticides should be the last defense available to home gardeners once all other disease prevention options have failed. Home gardeners have fewer fungicides or bactericides available to them compared to commercial growers, and these products may be less effective. Most types of vegetables can be grown most years in the home garden without the use of pesticides. The use of fungicides as a preventative measure may be an option if certain diseases have been problematic in previous years and other management options have not been effective. Your local county Extension office can provide both disease identification and management recommendations.

Maneb, mancozeb, Terraclor® (PCNB), sulfur and copper products are homeowner options that can be used on certain crops. These products suppress a range of fungal pathogens and are most effective if they are applied in a preventive manner either before or at the very onset of a disease outbreak. Fungicides are not effective on disease symptoms that are already present.

Terraclor is used as a transplant soil drench to suppress Southern blight and Rhizoctonia damping-off. Copper products suppress both fungal and bacterial pathogens. Sulfur is effective against powdery mildews. Coppers and sulfurs can burn the foliage on some plants so they must be used with care. As with any pesticide, read the label and follow the recommended precautions to ensure the chemical is applied in a safe, effective manner.

Organic Management

Organic disease and pest management is all about prevention. Organic pesticides are not effective unless their use is combined with the other methods of management outlined above. The main disease issues will occur when conditions are warm and humid on crops such as tomatoes (leaf spots and fruit rots) and squash (powdery and downy mildew, anthracnose). Organic products such as copper, sulfur, Serenade(R), etc., may help with foliar problems if they are used as a preventative before problems develop.

Contact your county Extension office for specific information about pesticide recommendations.


Healthy plants are the best prevention against plant diseases. Use proper cultural practices to promote and maintain healthy plants, which do not get diseases as readily as weak plants.

Status and Revision History
Published on Sep 07, 2006
Published on Feb 10, 2009
Published on May 04, 2009
Published with Minor Revisions on Jun 30, 2013
Published with Full Review on May 15, 2017

Elizabeth L. Little Extension Plant Pathologist - landscape, garden, and organic fruit and vegetables, Plant Pathology David B. Langston Plant Pathologist, Plant Pathology
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